SELECT 
  cscart_product_prices.product_id, 
  MIN(
    IF(
      cscart_product_prices.percentage_discount = 0, 
      cscart_product_prices.price, 
      cscart_product_prices.price - (
        cscart_product_prices.price * cscart_product_prices.percentage_discount
      )/ 100
    )
  ) AS price 
FROM 
  cscart_product_prices 
WHERE 
  cscart_product_prices.product_id IN (
    14096, 14108, 14094, 14047, 14082, 14058, 
    14107, 14081, 14115, 14114, 14113, 
    14046, 14104, 14074, 14662, 14073, 
    14072, 14099, 14098, 14071, 14133, 
    14106, 14070, 14045
  ) 
  AND cscart_product_prices.lower_limit = 1 
  AND cscart_product_prices.usergroup_id IN (0, 1) 
GROUP BY 
  cscart_product_prices.product_id

Query time 0.00072

JSON explain

{
  "query_block": {
    "select_id": 1,
    "cost": 0.06190128,
    "nested_loop": [
      {
        "table": {
          "table_name": "cscart_product_prices",
          "access_type": "range",
          "possible_keys": [
            "usergroup",
            "product_id",
            "lower_limit",
            "usergroup_id"
          ],
          "key": "usergroup",
          "key_length": "9",
          "used_key_parts": ["product_id", "usergroup_id", "lower_limit"],
          "loops": 1,
          "rows": 48,
          "cost": 0.04656984,
          "filtered": 49.95571136,
          "attached_condition": "cscart_product_prices.lower_limit = 1 and cscart_product_prices.product_id in (14096,14108,14094,14047,14082,14058,14107,14081,14115,14114,14113,14046,14104,14074,14662,14073,14072,14099,14098,14071,14133,14106,14070,14045) and cscart_product_prices.usergroup_id in (0,1)"
        }
      }
    ]
  }
}

Result

product_id price
14045 10.00000000
14046 7.00000000
14047 10.00000000
14058 6.00000000
14070 8.00000000
14071 7.00000000
14072 6.00000000
14073 8.00000000
14074 3.50000000
14081 6.00000000
14082 7.50000000
14094 7.50000000
14096 10.00000000
14098 10.00000000
14099 15.00000000
14104 7.50000000
14106 15.00000000
14107 17.00000000
14108 15.00000000
14113 3.50000000
14114 5.00000000
14115 3.50000000
14133 15.00000000
14662 14.80000000